- The Institute for Economics
- Croatian Geological Survey
- Croatian Institute of History
- Croatian Forest Research Institute
- Croatian Veterinary Institute
- Institute of Social Sciences Ivo Pilar
- Ruđer Bošković Institute
- Institute for Anthropological Research
- Instiut of Archaeology
- Institute for Social Research
- Institute of Ethnology and Folklore Research
- Institute of Philosophy
- Institute of Physics
- Institute for Croatian Language and Linguistics
- Institute for Adriatic Crops and Karst Reclamation
- Institute for Public Finances
- Institute of Medical Research and Occupational Health
- Institute for Migration and Ethnic Studies
- Institute of Oceanography and Fisheries
- Institute of Agriculture and Tourism
- The Institute of Art History
- Institute for Development and International Relations
- Institute for Tourism
- Agricultural Institute
- Old Church Slavonic Institute
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